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Soil nutrient distribution is heterogeneous in space and time, potentially altering nutrient acquisition by trees and microorganisms. Ecologists have distinguished “hot spots” (HSs) as areas with enhanced and sustained rates of nutrient fluxes relative to the surrounding soil matrix. We evaluated the spatial and temporal patterns in nutrient flux HSs in two mixed-conifer forest soils by repeatedly sampling the soil solution at the same spatial locations (horizontally and vertically) over multiple seasons and years using ion exchange resins incubated in situ. The climate of these forests is Mediterranean, with intense fall rains occurring following summers with little precipitation, and highly variable winter snowfall. Hot spots formed most often for NO₃⁻and Na⁺. Although nutrient HSs often occurred in the same spatial location multiple times, HSs persisted more often for PO₄³⁻NH₄⁺, and NO₃⁻, and were more transient for Ca²⁺, Mg²⁺, and Na⁺. Sampling year (annual precipitation ranged from 558 to 1223 mm) impacted the occurrence of HSs for most nutrients, but season was only significant for PO₄³⁻, NH₄⁺, NO₃⁻, and Na⁺, with HSs forming more often after fall rains than after spring snowmelt. The frequency of HSs significantly decreased with soil depth for all nutrients, forming most commonly immediately below the surficial organic horizon. Although HSs accounted for less than 17% of the sampling volume, they were responsible for 56–88% of PO₄³⁻, NH₄⁺, and NO₃⁻resin fluxes. Our results suggest that macronutrient HSs have a disproportional contribution to soil biogeochemical structure, with implications for vegetation nutrient acquisition strategies and biogeochemical models.

Graphical abstract

 

Dust provides an ecologically significant input of nutrients, especially in slowly eroding ecosystems where chemical weathering intensity limits nutrient inputs from underlying bedrock. In addition to nutrient inputs, incoming dust is a vector for dispersing dust-associated microorganisms. While little is known about dust-microbial dispersal, dust deposits may have transformative effects on ecosystems far from where the dust was emitted. Using molecular analyses, we examined spatiotemporal variation in incoming dust microbiomes along an elevational gradient within the Sierra Nevada of California. We sampled throughout two dry seasons and found that dust microbiomes differed by elevation across two summer dry seasons (2014 and 2015), which corresponded to competing droughts in dust source areas. Dust microbial taxa richness decreased with elevation and was inversely proportional to dust heterogeneity. Likewise, dust phosphorus content increased with elevation. At lower elevations, early season dust microbiomes were more diverse than those found later in the year. The relative abundances of microbial groups shifted during the summer dry season. Furthermore, mutualistic fungal diversity increased with elevation, which may have corresponded with the biogeography of their plant hosts. Although dust fungal pathogen diversity was equivalent across elevations, elevation and sampling month interactions for the relative abundance, diversity, and richness of fungal pathogens suggest that these pathogens differed temporally across elevations, with potential implications for humans and wildlife. This study shows that landscape topography and droughts in source locations may alter the composition and diversity of ecologically relevant dust-associated microorganisms. 

Subsoil microbiomes play important roles in soil carbon and nutrient cycling, yet our understanding of the controls on subsoil microbial communities is limited. Here, we investigated the direct (mean annual temperature and precipitation) and indirect (soil chemistry) effects of climate on microbiome composition and extracellular enzyme activity throughout the soil profile across two elevation-bioclimatic gradients in central California, USA. We found that microbiome composition changes and activity decreases with depth. Across these sites, the direct influence of climate on microbiome composition and activity was relatively lower at depth. Furthermore, we found that certain microbial taxa change in relative abundance over large temperature and precipitation gradients only in specific soil horizons, highlighting the depth dependence of the climatic controls on microbiome composition. Our finding that the direct impacts of climate are muted at depth suggests that deep soil microbiomes may lag in their acclimation to new temperatures with a changing climate.

 

Nitrogen (N) is a key limiting nutrient in terrestrial ecosystems, but there remain critical gaps in our ability to predict and model controls on soil N cycling. This may be in part due to lack of standardized sampling across broad spatial–temporal scales. Here, we introduce a continentally distributed, publicly available data set collected by the National Ecological Observatory Network (NEON) that can help fill these gaps. First, we detail the sampling design and methods used to collect and analyze soil inorganic N pool and net flux rate data from 47 terrestrial sites. We address methodological challenges in generating a standardized data set, even for a network using uniform protocols. Then, we evaluate sources of variation within the sampling design and compare measured net N mineralization to simulated fluxes from the Community Earth System Model 2 (CESM2). We observed wide spatiotemporal variation in inorganic N pool sizes and net transformation rates. Site explained the most variation in NEON’s stratified sampling design, followed by plots within sites. Organic horizons had larger pools and net N transformation rates than mineral horizons on a sample weight basis. The majority of sites showed some degree of seasonality in N dynamics, but overall these temporal patterns were not matched by CESM2, leading to poor correspondence between observed and modeled data. Looking forward, these data can reveal new insights into controls on soil N cycling, especially in the context of other environmental data sets provided by NEON, and should be leveraged to improve predictive modeling of the soil N cycle.

 

Abstract Plants frequently exhibit tradeoffs between reproduction and growth when resources are limited, and often change these allocation patterns in response to stress. Shorter-lived plants such as annuals tend to allocate relatively more resources toward reproduction when stressed, while longer-lived plants tend to invest more heavily in survival and stress defense. However, severe stress may affect the fitness implications of allocating relatively more resources to reproduction versus stress defense. Increased drought intensity and duration have led to widespread mortality events in coniferous forests. In this review, we ask how potential tradeoffs between reproduction and survival influence the likelihood of drought-induced mortality and species persistence. We propose that trees may exhibit what we call ‘fight or flight’ behaviors under stress. ‘Fight’ behaviors involve greater resource allocation toward survival (e.g., growth, drought-resistant xylem and pest defense). ‘Flight’ consists of higher relative allocation of resources to reproduction, potentially increasing both offspring production and mortality risk for the adult. We hypothesize that flight behaviors increase as drought stress escalates the likelihood of mortality in a given location. 

Aeolian dust deposition is an important phosphorus (P) input to terrestrial ecosystems, but its influence on P dynamics during long-term ecosystem development remains poorly understood. In this study, we characterized P speciation using P K-edge XANES spectroscopy in surface soils (0–15 cm, A horizon) and contemporary aeolian dust collected at each site of a 3000-ky volcanic soil chronosequence in a cool, semi-arid environment. Phosphorus speciation in dust was dominated by calcium-bound P (Ca-P; 54–74%), with 11–23% iron and aluminum-bound P [(Fe + Al)-P] and 7–25% organic P (Po). In soils, Po contributed 1–23% of total P, being greater in older soils; however, the proportions of Ca-P (16–39%) and (Fe + Al)-P (48–82%) fluctuated with increasing weathering over the soil chronosequence. These soil fluctuations resulted from the accumulation and preservation of alkaline aeolian dust during pedogenesis in the semi-arid climate, which significantly increased soil Ca-P while decreasing the total amounts and relative abundances of soil (Fe + Al)-P. We suggest that the effects of an aeolian dust input on soil P transformations are functions of the relative magnitude and chemical composition of the dust input and the soil weathering intensity. For a given source of dust, when the net dust flux is greater than the weathering rate, dust accumulates and thus alters the pattern of P transformations during pedogenesis; otherwise, the dust influence on soil P transformations is negligible. By accurately identifying the chemical nature of P pools, our work highlights the advantage of P K-edge XANES spectroscopy over chemical extractions in examining soil P dynamics, and demonstrates how dust inputs can modify the Walker and Syers model of pedogenic P transformations in semi-arid environments. Overall, this work provides a foundation for understanding how dust influences P cycling during soil and ecosystem development, and indicates that dust inputs and composition, and the soil weathering rate, all must be considered for developing integrated climate-biogeochemical models with predictive power in terrestrial ecosystems.